achim kramer lab :journal club

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22.12.2009 : Achim
A role for microRNAs in the Drosophila circadian clock.
Kadener S, Menet JS, Sugino K, Horwich MD, Weissbein U, Nawathean P, Vagin VV, Zamore PD, Nelson SB, Rosbash M.
Genes Dev. 2009 Sep 15;23(18):2179-91.

15.12.2009 : Agnes
Quantification of circadian rhythms in single cells.
Westermark PO, Welsh DK, Okamura H, Herzel H.
PLoS Comput Biol. 2009 Nov;5(11):e1000580.

08.12.2009 : Manjana
Essential roles of CKI{delta} and CKI{varepsilon} in the mammalian circadian clock.
Lee H, Chen R, Lee Y, Yoo S, Lee C.
Proc Natl Acad Sci U S A. 2009 Dec 15;106(50):21359-64.

01.12.2009 : Bert
Time of feeding and the intrinsic circadian clock drive rhythms in hepatic gene expression.
Vollmers C, Gill S, Ditacchio L, Pulivarthy SR, Le HD, Panda S.
Proc Natl Acad Sci U S A. 2009 Dec 15;106(50):21453-8.

24.11.2009 : Ute
Proteomic Analysis Reveals the Role of Synaptic Vesicle Cycling in Sustaining the Suprachiasmatic Circadian Clock.
Deery MJ, Maywood ES, Chesham JE, Sládek M, Karp NA, Green EW, Charles PD, Reddy AB, Kyriacou CP, Lilley KS, Hastings MH.
Curr Biol. 2009 Nov 11; 19(23):2031-2036.

17.11.2009 : Katja
Circadian clock genes contribute to the regulation of hair follicle cycling.
Lin KK, Kumar V, Geyfman M, Chudova D, Ihler AT, Smyth P, Paus R, Takahashi JS, Andersen B.
PLoS Genet. 2009 Jul;5(7):e1000573.

10.11.2009 : Mathias
Seasonal photoperiodism in vertebrates: from coincidence to amplitude.
Hazlerigg DG, Wagner GC.
Trends Endocrinol Metab. 2006 Apr;17(3):83-91. Epub 2006 Mar 2.

03.11.2009 : Sabrina
Glucocorticoid regulation of the circadian clock modulates glucose homeostasis.
So AY, Bernal TU, Pillsbury ML, Yamamoto KR, Feldman BJ.
Proc Natl Acad Sci U S A. 2009 Oct 13;106(41):17582-7.

27.10.2009 : Jeannine
AMPK regulates the circadian clock by cryptochrome phosphorylation and degradation.
Lamia KA, Sachdeva UM, DiTacchio L, Williams EC, Alvarez JG, Egan DF, Vasquez DS, Juguilon H, Panda S, Shaw RJ, Thompson CB, Evans RM.
Science. 2009 Oct 16;326(5951):437-40.

20.10.2009 : Silke
CKIepsilon/delta-dependent phosphorylation is a temperature-insensitive, period-determining process in the mammalian circadian clock.
Isojima Y, Nakajima M, Ukai H, Fujishima H, Yamada RG, Masumoto KH, Kiuchi R, Ishida M, Ukai-Tadenuma M, Minami Y, Kito R, Nakao K, Kishimoto W, Yoo SH, Shimomura K, Takao T, Takano A, Kojima T, Nagai K, Sakaki Y, Takahashi JS, Ueda HR.
Proc Natl Acad Sci U S A. 2009 Sep 15;106(37):15744-9. Epub 2009 Sep 2.

13.10.2009 : Rupert
Antennal circadian clocks coordinate sun compass orientation in migratory monarch butterflies.
Merlin C, Gegear RJ, Reppert SM.
Science. 2009 Sep 25;325(5948):1700-4.

08.10.2009 : Achim
The exosome regulates circadian gene expression in a posttranscriptional negative feedback loop.
Guo J, Cheng P, Yuan H, Liu Y.
Cell. 2009 Sep 18;138(6):1236-46. Epub 2009 Sep 10.

29.09.2009 : Thomas
A genome-wide RNAi screen for modifiers of the circadian clock in human cells.
Zhang EE, Liu AC, Hirota T, Miraglia LJ, Welch G, Pongsawakul PY, Liu X, Atwood A, Huss JW 3rd, Janes J, Su AI, Hogenesch JB, Kay SA.
Cell. 2009 Oct 2;139(1):199-210. Epub 2009 Sep 17.

22.09.2009 : Agnes
Clock gene modulation by TNF-alpha depends on calcium and p38 MAP kinase signaling.
Petrzilka S, Taraborrelli C, Cavadini G, Fontana A, Birchler T.
J Biol Rhythms. 2009 Aug;24(4):283-94.

15.09.2009 : Manjana
REV-ERBalpha participates in circadian SREBP signaling and bile acid homeostasis.
Le Martelot G, Claudel T, Gatfield D, Schaad O, Kornmann B, Sasso GL, Moschetta A, Schibler U.
PLoS Biol. 2009 Sep;7(9):e1000181. Epub 2009 Sep 1.

08.09.2009 : scientific retreat




01.09.2009 : Ute
The transcriptional repressor DEC2 regulates sleep length in mammals.
He Y, Jones CR, Fujiki N, Xu Y, Guo B, Holder JL Jr, Rossner MJ, Nishino S, Fu YH.
Science. 2009 Aug 14;325(5942):866-70.

25.08.2009 : Bert
Generation of a Novel Allelic Series of Cryptochrome Mutants via Mutagenesis Reveals Residues Involved in Protein: Protein Interaction and CRY2-Specific Repression.
McCarthy EV, Baggs JE, Geskes JM, Hogenesch JB, Green CB.
Mol Cell Biol. 2009 Aug 17. [Epub ahead of print]

18.08.2009 : Rupert
Posttranslational mechanisms regulate the mammalian circadian clock.
Lee C, Etchegaray JP, Cagampang FR, Loudon AS, Reppert SM
Cell. 2001 Dec 28;107(7):855-67.

11.08.2009 : Sabrina
mCRY1 and mCRY2 are essential components of the negative limb of the circadian clock feedback loop.
Kume K, Zylka MJ, Sriram S, Shearman LP, Weaver DR, Jin X, Maywood ES, Hastings MH, Reppert SM.
Cell. 1999 Jul 23;98(2):193-205.

06.08.2009 : Silke
Positional cloning of the mouse circadian clock gene.
King DP, Zhao Y, Sangoram AM, Wilsbacher LD, Tanaka M, Antoch MP, Steeves TD, Vitaterna MH, Kornhauser JM, Lowrey PL, Turek FW, Takahashi JS.
Cell. 1997 May 16;89(4):641-53.

Functional identification of the mouse circadian Clock gene by transgenic BAC rescue.
Antoch MP, Song EJ, Chang AM, Vitaterna MH, Zhao Y, Wilsbacher LD, Sangoram AM, King DP, Pinto LH, Takahashi JS.
Cell. 1997 May 16;89(4):655-67.

28.07.2009 : Jeannine
The circadian gene Period2 plays an important role in tumor suppression and DNA damage response in vivo.
Fu L, Pelicano H, Liu J, Huang P, Lee C.
Cell. 2002 Oct 4;111(1):41-50.

21.07.2009 : Katja
Control mechanism of the circadian clock for timing of cell division in vivo.
Matsuo T, Yamaguchi S, Mitsui S, Emi A, Shimoda F, Okamura H.
Science. 2003 Oct 10;302(5643):255-9. Epub 2003 Aug 21.

14.07.2009 : Thomas
Casein kinase 1 delta regulates the pace of the mammalian circadian clock.
Etchegaray JP, Machida KK, Noton E, Constance CM, Dallmann R, Di Napoli MN, DeBruyne JP, Lambert CM, Yu EA, Reppert SM, Weaver DR.
Mol Cell Biol. 2009 Jul;29(14):3853-66. Epub 2009 May 4.

07.07.2009 : Achim
Quantitative proteomics reveals a dynamic interactome and phase-specific phosphorylation in the Neurospora circadian clock.
Baker CL, Kettenbach AN, Loros JJ, Gerber SA, Dunlap JC.
Mol Cell. 2009 May 15;34(3):354-63.

30.06.2009 : Agnes
The mammalian molecular clockwork controls rhythmic expression of its own input pathway components.
Pfeffer M, Müller CM, Mordel J, Meissl H, Ansari N, Deller T, Korf HW, von Gall C.
J Neurosci. 2009 May 13;29(19):6114-23.

23.06.2009 : Manjana
Setting the pace of the Neurospora circadian clock by multiple independent FRQ phosphorylation events.
Tang CT, Li S, Long C, Cha J, Huang G, Li L, Chen S, Liu Y.
Proc Natl Acad Sci U S A. 2009 Jun 8. [Epub ahead of print]

16.06.2009 : Bert
Integration of microRNA miR-122 in hepatic circadian gene expression.
Gatfield D, Le Martelot G, Vejnar CE, Gerlach D, Schaad O, Fleury-Olela F, Ruskeepää AL, Oresic M, Esau CC, Zdobnov EM, Schibler U.
Genes Dev. 2009 Jun 1;23(11):1313-26.

09.06.2009 : Ute
Measurement of internal body time by blood metabolomics.
Minami Y, Kasukawa T, Kakazu Y, Iigo M, Sugimoto M, Ikeda S, Yasui A, van der Horst GT, Soga T, Ueda HR.
Proc Natl Acad Sci U S A. 2009 Jun 1. [Epub ahead of print]

02.06.2009 : Jeannine
A role for casein kinase 2 in the mechanism underlying circadian temperature compensation.
Mehra A, Shi M, Baker CL, Colot HV, Loros JJ, Dunlap JC.
Cell. 2009 May 15;137(4):749-60.

26.05.2009 : no seminar




19.05.2009 : Rupert
Circadian activity and abundance rhythms of the Neurospora clock transcription factor WCC associated with rapid nucleo-cytoplasmic shuttling.
Schafmeier T, Diernfellner A, Schäfer A, Dintsis O, Neiss A, Brunner M.
Genes Dev. 2008 Dec 15;22(24):3397-402.

12.05.2009 : Sabrina
Roles of CLOCK phosphorylation in suppression of E-box-dependent transcription.
Yoshitane H, Takao T, Satomi Y, Du NH, Okano T, Fukada Y.
Mol Cell Biol. 2009 May 4.

04.05.2009 : Praktikanten




28.04.2009 : Silke
Daily rhythms of food-anticipatory behavioral activity do not require the known circadian clock.
Storch KF, Weitz CJ.
Proc Natl Acad Sci U S A. 2009 Apr 21;106(16):6808-13. Epub 2009 Apr 6.

21.04.2009 : Katja
Harmonics of circadian gene transcription in mammals.
Hughes ME, DiTacchio L, Hayes KR, Vollmers C, Pulivarthy S, Baggs JE, Panda S, Hogenesch JB.
PLoS Genet. 2009 Apr;5(4):e1000442. Epub 2009 Apr 3.

14.04.2009 : no seminar




07.04.2009 : Thomas
Circadian Clock Feedback Cycle Through NAMPT-Mediated NAD+ Biosynthesis.
Ramsey KM, Yoshino J, Brace CS, Abrassart D, Kobayashi Y, Marcheva B, Hong HK, Chong JL, Buhr ED, Lee C, Takahashi JS, Imai SI, Bass J.
Science. 2009 Mar 19. [Epub ahead of print]

Circadian Control of the NAD+ Salvage Pathway by CLOCK-SIRT1.
Nakahata Y, Sahar S, Astarita G, Kaluzova M, Sassone-Corsi P.
Science. 2009 Mar 12. [Epub ahead of print]

31.03.2009 : Achim
Network features of the mammalian circadian clock.
Baggs JE, Price TS, DiTacchio L, Panda S, Fitzgerald GA, Hogenesch JB.
PLoS Biol. 2009 Mar 10;7(3):e52.

24.03.2009 : Agnes
Clock-dependent and independent transcriptional control of the two isoforms from the mouse Rorgammagene.
Mongrain V, Ruan X, Dardente H, Fortier EE, Cermakian N.
Genes Cells. 2008 Dec;13(12):1197-210.

17.03.2009 : Manjana
G protein-coupled receptor kinase 2 is required for rhythmic olfactory responses in Drosophila.
Tanoue S, Krishnan P, Chatterjee A, Hardin PE.
Curr Biol. 2008 Jun 3;18(11):787-94. Epub 2008 May 22.

10.03.2009 : Bert
The circadian rhythm of glucocorticoids is regulated by a gating mechanism residing in the adrenal cortical clock.
Oster H, Damerow S, Kiessling S, Jakubcakova V, Abraham D, Tian J, Hoffmann MW, Eichele G.
Cell Metab. 2006 Aug;4(2):163-73.

03.03.2009 : William Schwartz




24.02.2009 : Ute
The methamphetamine-sensitive circadian oscillator does not employ canonical clock genes.
Mohawk JA, Baer ML, Menaker M.
Proc Natl Acad Sci U S A. 2009 Mar 3;106(9):3519-24. Epub 2009 Feb 9.

17.02.2009 : Rupert
Mouse period 2 mRNA circadian oscillation is modulated by PTB-mediated rhythmic mRNA degradation.
Woo KC, Kim TD, Lee KH, Kim DY, Kim W, Lee KY, Kim KT.
Nucleic Acids Res. 2009 Jan;37(1):26-37. Epub 2008 Nov 14.

10.02.2009 : Sabrina
Circadian gene expression is resilient to large fluctuations in overall transcription rates.
Dibner C, Sage D, Unser M, Bauer C, d'Eysmond T, Naef F, Schibler U.
EMBO J. 2009 Jan 21;28(2):123-34. Epub 2008 Dec 11.

03.02.2009 : Jeannine
A tunable synthetic mammalian oscillator.
Tigges M, Marquez-Lago TT, Stelling J, Fussenegger M.
Nature. 2009 Jan 15;457(7227):309-12.

27.01.2009 : Frauenchiemsee
Journal Club on the airport of Munich: most actual precedings in the field of Chronobiology! ;-)

20.01.2009 : Silke
Ribosomal s6 kinase cooperates with casein kinase 2 to modulate the Drosophila circadian molecular oscillator.
Akten B, Tangredi MM, Jauch E, Roberts MA, Ng F, Raabe T, Jackson FR.
J Neurosci. 2009 Jan 14;29(2):466-75.

13.01.2009 : Katja
Adrenal peripheral clock controls the autonomous circadian rhythm of glucocorticoid by causing rhythmic steroid production.
Son GH, Chung S, Choe HK, Kim HD, Baik SM, Lee H, Lee HW, Choi S, Sun W, Kim H, Cho S, Lee KH, Kim K.
Proc Natl Acad Sci U S A. 2008 Dec 30;105(52):20970-5. Epub 2008 Dec 17.

06.01.2009 : Katrin
A chemical biology approach reveals period shortening of the mammalian circadian clock by specific inhibition of GSK-3beta.
Hirota T, Lewis WG, Liu AC, Lee JW, Schultz PG, Kay SA.
Proc Natl Acad Sci U S A. 2008 Dec 30;105(52):20746-51. Epub 2008 Dec 22.